Publications

2012 2011 2010 2009 2008 2007 2006 2005 2004 2003
2002 2001 2000 1999 1998 1997 1996 1995 1994
  1. Edward J. Sambriski, Vanessa Ortiz, and Juan J. de Pablo
    "Sequence effects in the melting and renaturation of short DNA oligonucleotides: structure and mechanistic pathways".
    Journal of Physics-Condensed Matter 21(3):034105, January 21 2009. [doi:10.1088/0953-8984/21/3/034105 ] [IOP/JPCM]
  2. Clark A. Miller, Nicholas L. Abbott, and Juan J. de Pablo
    "Surface activity of amphiphilic helical beta-peptides from molecular dynamics simulation".
    Langmuir 25(5):2811-2823, March 3 2009. [doi:10.1021/la802973e ] [ACS/LA]
  3. Edward J. Sambriski, David C. Schwartz, and Juan J. de Pablo
    "A mesoscale model of DNA and its renaturation".
    Biophysical Journal 96(5):1675-1690, March 4 2009. [doi:10.1016/j.bpj.2008.09.061 ] [Elsevier/BPJ]
  4. Hua Yu, Kyubong Jo, Kristy L. Kounovsky, Juan J. de Pablo, and David C. Schwartz
    "Molecular propulsion: chemical sensing and chemotaxis of DNA driven by DNA polymerase".
    Journal of the American Chemical Society 131(16):5722, April 29 2009. [doi:10.1021/ja900372m ] [ACS/JACS]
  5. Francois A. Detcheverry, Darin Q. Pike, Paul F. Nealey, Marcus Meuller, and Juan J. de Pablo
    "Monte carlo simulation of coarse grain polymeric systems".
    Physical Review Letters 102(19):197801, May 15 2009. [doi:10.1103/PhysRevLett.102.197801 ] [APS/PRL]
  6. Robert A. Riggleman, Gregory N. Toepperwein, George J. Papakonstantopoulos, and Juan J. de Pablo
    "Dynamics of a glassy polymer nanocomposite during active deformation".
    Macromolecules 42(10):3632-3640, May 26 2009. [doi:10.1021/ma802865n ] [ACS/MA]
  7. Clark A. Miller, Samuel H. Gellman, Nicholas L. Abbott, and Juan J. de Pablo
    "Association of helical beta-peptides and their aggregation behavior from the potential of mean force in explicit solvent".
    Biophysical Journal 96(11):4349-4362, June 3 2009. [doi:10.1016/j.bpj.2008.11.076 ] [Elsevier/BPJ]
  8. Yu Zhang, Aleksander Donev, Todd Weisgraber, Berni J. Alder, Michael D. Graham, and Juan J. de Pablo.
    "Tethered DNA dynamics in shear flow".
    Journal of Chemical Physics 130(23):234902, June 21 2009. [doi:10.1063/1.3149860 ] [AIP/JCP]
  9. Hau-Nan Lee, Robert A. Riggleman, Juan J. de Pablo, and Mark D. Ediger
    "Deformation-induced mobility in polymer glasses during multistep creep experiments and simulations".
    Macromolecules 42(12):4328-4336, June 23 2009. [doi:10.1021/ma900394n ] [ACS/MA]
  10. Robert A. Riggleman, Greggory Toepperwein, George J. Papakonstantopoulos, Jean-Louis Barrat, and Juan J. de Pablo.
    "Entanglement network in nanoparticle reinforced polymers".
    Journal of Chemical Physics 130(24):244903, June 28 2009. [doi:10.1063/1.3148026 ] [AIP/JCP]
  11. Gary M. Koenig, Rizal Ong, Angel D. Cortes, J. Antonio Moreno-Razo, Juan J. de Pablo, and Nicholas L. Abbott
    "Single nanoparticle tracking reveals influence of chemical functionality of nanoparticles on local ordering of liquid crystals and nanoparticle diffusion coefficients".
    Nano Letters 9(7):2794-2801, July 2009. [doi:10.1021/nl901498d ] [ACS/NL]
  12. Manabu Tanaka, Abhinav Rastogi, Gregory N. Toepperwein, Robert A. Riggleman, Nelson M. Felix, Juan J. de Pablo, and Christopher K. Ober.
    "Fluorinated quaternary ammonium salts as dissolution aids for polar polymers in environmentally benign supercritical carbon dioxide".
    Chemistry of Materials 21(14):3125-3135, July 28, 2009. [doi:10.1021/cm900406c] [ACS/CM]
  13. Darin Q. Pike, Francois A. Detcheverry, Marcus Meuller, and Juan J. de Pablo.
    "Theoretically informed coarse grain simulations of polymeric systems".
    Journal of Chemical Physics 131(8):084903, August 2009. [doi:10.1063/1.3187936 ] [AIP/JCP]
  14. Allam S. Reddy, Aslin Izmitli, and Juan J. de Pablo.
    "Effect of trehalose on amyloid beta (29-40)-membrane interaction".
    Journal of Chemical Physics 131(8):085101, August 2009. [doi:10.1063/1.3193726 ] [AIP/JCP]
  15. Kyubong Jo, Yeng-Long Chen, Juan J. de Pablo, and David C. Schwartz.
    "Elongation and migration of single DNA molecules in microchannels using oscillatory shear flows".
    Lab on a Chip 9(16):2348-2355, August 2009. [doi:10.1039/b902292a ] [RCS/LabonaChip]
  16. Jugal K. Gupta, Jacob S. Zimmerman, Juan J. de Pablo, Frank Caruso, and Nicholas L. Abbott.
    "Characterization of adsorbate-induced ordering transitions of liquid crystals within monodisperse droplets".
    Langmuir 25(16):9016-9024, August 18 2009. [doi:10.1021/la900786b ] [ACS/LA]
  17. Prateek K. Jha, Francisco J. Solis, Juan J. de Pablo, and Monica Olvera de la Cruz.
    "Nonlinear effects on the nanophase segregation of polyelectrolyte gels".
    Macromolecules 42(16):6284-6289, August 25 2009. [doi:10.1021/ma901035e ] [ACS/MA]
  18. Yu Zhang, Juan J. de Pablo, and Michael D. Graham.
    "Multiple free energy minima in systems of confined tethered polymers-toward soft nanomechanical bistable elements".
    Soft Matter 5(19):3694-3700, October 2009. [doi:10.1039/b909147e ] [RCS/SoftMatt]
  19. Edward J. Sambriski, David C. Schwartz, and Juan J. de Pablo.
    "Uncovering pathways in DNA oligonucleotide hybridization via transition state analysis".
    Proceedings of the National Academy of Sciences 106(43):18125-18130, October 27 2009. [doi:10.1073/pnas.0912578106 ] [PNAS]
  20. De-Wei Yin, Monica Olvera de la Cruz, and Juan J. de Pablo.
    "Swelling and collapse of polyelectrolyte gels in equilibrium with monovalent and divalent electrolyte solutions".
    Journal of Chemical Physics 131(19):194907, November 21 2009. [doi:10.1063/1.3264950 ] [AIP/JCP]
  21. Francois A. Detcheverry, Darin Q. Pike, Umang Nagpal, and Juan J. de Pablo.
    "Theoretically informed coarse grain simulations of block copolymer melts: method and applications".
    Soft Matter 5(24):4858-4865, December 2009. [doi:10.1039/b911646j ] [RSC/SoftMatt]
  22. Gary M. Koenig, Juan J. de Pablo, and Nicholas L. Abbott.
    "Characterization of the reversible interaction of pairs of nanoparticles dispersed in nematic liquid crystals".
    Langmuir 25(23):13318-13321, December 1 2009. [doi:10.1021/la903464t ] [ASC/LA]