Publications

1. Kostas Ch. Daoulas, Marcus Müller, Mark P. Stoykovich, Sang-Min Park, Yioryos, J. Papakonstantopoulos, Juan J. de Pablo, Paul F. Nealey, and Harun H. Solak.
   "Fabrication of Complex Three-Dimensional Nanostructures from Self-Assembling Block Copolymer Materials on Two-Dimensional Chemically Patterned Templates with Mismatched Symmetry".
   Physical Review Letters 96(3):036104, January 24, 2006. [doi:10.1103/PhysRevLett.96.036104] [APS/PhysRevLett]
2. Satoshi Ohtake, Carolina Schebor, and Juan J. de Pablo.
   "Effects of trehalose on the phase behavior of DPPC-cholesterol unilamellar vesicles".
   Biochimica et Biophysica Acta-Biomembranes 1758(1):65-73, January 27, 2006. [doi:10.1016/j.bbamem.2006.01.002] [Elsevier/ScienceDirect]
3. Nitin Rathore, Thomas A. Knotts IV, and Juan J. de Pablo.
   "Confinement Effects on the Thrmodynamics of Protein Folding: Monte Carlo Simulations".
   Biophysical Journal, 90(5):1767-1773, March 1, 2006. [doi:10.1529/biophysj.105.071076] [BiophysJ]
4. Christopher G. Stoltz, Juan J. de Pablo, and Michael D. Graham.
   "Concentration dependence of shear and extensional rheology of polymer solutions: Brownian dynamics simulations".
   Journal of Rheology 50(2):137-167, March-April, 2006. [doi:10.1122/1.2167468] [AIP/JOR]
5. Manan Chopra and Juan J. de Pablo.
   "Improved density of states Monte Carlo method based on recycling of rejected states".
   Journal of Chemical Physics 124(11):114102, March 21, 2006. [doi:10.1063/1.2178319] [AIP/JCP]
6. Manan Chopra, Marcus Müller, and Juan J. de Pablo.
   "Order-parameter-based Monte Carlo simulation of crystallization".
   Journal of Chemical Physics 124(13):134102, April 7, 2006. [doi:10.1063/1.2178324] [AIP/JCP]
7. Antonin Novak, Marek Bobak, Juraj Kosek, Brian J. Banaszak, Dennis Lo, Tomy Widya, W. Harmon Ray, and Juan J. de Pablo.
   "Ethylene and 1-hexene sorption in LLDPE under typical gas-phase reactor conditions: Experiments".
   Journal of Applied Polymer Science, 100(2):1124-1136, April 15, 2006. [doi:10.1002/app.23508] [Wiley/JApplPolymSci]
8. Rajesh Khare, Michael D. Graham, and Juan J. de Pablo.
   "Cross-Stream Migration of Flexible Molecules in a Nanochannel".
   Physical Review Letters, 96(22):224505, June 8, 2006. [doi:10.1103/PhysRevLett.96.224505] [APS/PRL]
9. Francisco R. Hung, Orlando Guzmán, Brian T. Gettelfinger, Nicholas L. Abbott, and Juan J. de Pablo.
   "Anisotropic Nanoparticles Immersed in a Nematic Liquid Crystal: Defect Structures and Potentials of Mean Force".
   Physical Review E 74(01):011711, July 27, 2006. [doi:10.1103/PhysRevE.74.011711] [APS/PRE]
10. Robert A. Riggleman, Kenji Yoshimoto, Jack F. Douglas, and Juan J. de Pablo.
    "Influence of Confinement on the Fragility of Antiplasticized and Pure Polymer Films".
    Physical Review Letters, 97(4):045502, July 27, 2006. [doi:10.1103/PhysRevLett.97.045502] [APS/PRL]
11. Marcus Müller and Juan J. de Pablo.
    "Simulation Techniques for Calculating Free Energies".
    In Computer Simulations in Condensed Matter Systems: From Materials to Chemical Biology, Volume 1, edited by Mauro Ferrario, Giovanni Ciccotti, and Kurt Binder,
    Lecture Notes in Physics 703:67-126, August 2006. [doi:10.1007/3-540-35273-2_3] [Springer] [PDF]
12. Juan P. Hernández-Ortiz, Juan J. de Pablo, and Michael D. Graham.
    "NlogN Method for Hydrodynamic Interactions of Confined Polymer Systems: Brownian Dynamics".
    Journal of Chemical Physics 125(16):164906, October 26, 2006. [doi:10.1063/1.2358344] [AIP/JCP]
13. Nitin Rathore, Samuel H. Gellman, and Juan J. de Pablo.
    "Thermodynamic Stability of beta-Peptide Helices and the Role of Cyclic Residues".
    Biophysical Journal, 91(9):3425-3435, November 1, 2006. [doi:10.1529/biophysj.106.084491] [BiophysJ]
14. Juan P. Hernández-Ortiz, Hongbo Ma, Juan J. de Pablo, and Michael D. Graham.
    "Cross-Stream-Line Migration in Confined Flowing Polymer Solutions: Theory and Simulation".
    Physics of Fluids 18(12):123101, December 6, 2006. [doi:10.1063/1.2397571] [AIP/PhysFluids]